![]() ![]() Some biostatisticians have been concerned about interspersing code with the contents of the report. ![]() (mainly using knitr in R) and to a large extent with 2. All reports should include all the code used to produce the report, in some fashionWe have succeeded with 1. All statistical reports will be reproducible2. title: Using R, Rmarkdown, RStudio, knitr, plotly, and HTML for the Next Generation of Reproducible Statistical Reports author: - name: Frank Harrell url: date: categories: description: "The Vanderbilt Department of Biostatistics has two policies currently in effect:1. Ggplotly: a function that converts any ggplot2 graphic to a plotly interactive graphic: A few miscellaneous topics will also be covered, e.g. how to cite bibliographic references in Rmarkdown and how to interface R to for viewing or extracting bibliographic references. In this talk the rationale for this approach is discussed, and the new features are demonstrated with two statistical reports. Interactive plotly graphics (based on Javascript and D3) and customized HTML output are the main new ingredients. I have made major revisions in the R Hmisc and rms packages to provide new capabilities that fit into the R/RStudio Rmarkdown HTML notebook framework. Interactive graphics allow the analyst to create more detail (e.g., confidence bands for multiple confidence levels confidence bands for group differences as well as those for each group individually) with the collaborator able to easily select which details to view. This solves the problems listed above and adds new possibilities such as interactive graphics that appear in a self-contained HTML file to post on a collaboration web server or send to a collaborator. It has also been challenging to copy some PDF report components (e.g., advanced tables) into word processing documents.įortunately R and RStudio have recently added a number of new features that allow for easy creation of HTML notebooks that are viewed with any web browser. All reports should include all the code used to produce the report, in some fashion ![]() All statistical reports will be reproducibleĢ. The Vanderbilt Department of Biostatistics has two policies currently in effect:ġ.
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